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End-of-Year Bonus Taxation: What Employers Need to Know Before December Payroll

15 November 2025

Why Bonuses Require Special Attention

Annual bonuses are a common way for employers to reward staff, but they are frequently processed incorrectly from a PAYE perspective. The most common error is applying the employee's standard monthly PAYE rate to the bonus, which almost always results in under-deduction and subsequent penalties.

Correct PAYE Treatment for Bonuses

Under the Income Tax Act (Cap 470), bonuses are employment income and must be taxed using the annual income method — not the simple monthly rate method.

Step-by-step process:

  1. Calculate the employee's projected annual taxable income including the bonus
  2. Compute the annual PAYE on the total projected income using the annual tax bands
  3. Subtract PAYE already deducted year-to-date
  4. Deduct the balance from the bonus payment

This approach ensures the correct amount of tax is withheld in the month the bonus is paid.

NSSF and Housing Levy on Bonuses

  • NSSF Tier I and Tier II — contributions are calculated on pensionable pay, which typically excludes bonuses unless your scheme rules specify otherwise. Review your scheme deed before processing.
  • Affordable Housing Levy — the 1.5% levy applies to gross pay including bonuses. Ensure both employee and employer contributions are remitted by the 9th of the following month.

Common Mistakes to Avoid

| Mistake | Consequence | |---|---| | Using standard monthly tax rate | Under-deduction, penalties on employer | | Forgetting housing levy on bonus | Compliance gap, interest charges | | Delaying iTax remittance past 9th | 5% penalty plus 2% monthly interest | | Failing to include in P9 form | Employee disputes, audit queries |

Need Help with Your December Payroll?

Our payroll team manages end-of-year bonus payroll for dozens of clients annually. Contact us by the 15th of November to ensure your December payroll is processed correctly and on time.